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    LOC4336585 ethylene-responsive transcription factor ERF038 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336585, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336585
    Gene description
    ethylene-responsive transcription factor ERF038
    Locus tag
    OSNPB_040549700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DREB
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    Genomic context

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    See LOC4336585 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28022273..28023424)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27517179..27518353)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable transcription factor MYB58 Neighboring gene chaperone protein dnaJ A6-like Neighboring gene ethylene-responsive transcription factor ERF039 Neighboring gene uncharacterized LOC136355931

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF038
    Names
    AP2-EREBP transcription factor
    Os04g0549700
    transcription factor DREB

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28022273..28023424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780276.3 → XP_015635762.1  ethylene-responsive transcription factor ERF038

      UniProtKB/TrEMBL
      A0A0U1XP05, A2XW65, Q01ID8, Q0JB87, Q7XU22
      Conserved Domains (1) summary
      smart00380
      Location:117 → 174
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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