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    LOC4324160 NADPH-dependent diflavin oxidoreductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324160, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324160
    Gene description
    NADPH-dependent diflavin oxidoreductase 1
    Locus tag
    OSNPB_010733600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1060H01.9
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    Genomic context

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    See LOC4324160 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31191403..31196490, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30593431..30599058, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene heat stress transcription factor C-1b-like Neighboring gene BURP domain-containing protein 3-like Neighboring gene probable WRKY transcription factor 24 Neighboring gene uncharacterized LOC4324162

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADPH-hemoprotein reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NADPH-dependent diflavin oxidoreductase 1
    Names
    OSJNBb0036G09.20
    Os01g0733600
    putative NADPH-dependent FMN and FAD containing oxidoreductase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31191403..31196490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765887.2 → XP_015621373.1  NADPH-dependent diflavin oxidoreductase 1 isoform X2

      Conserved Domains (2) summary
      cd06207
      Location:125 → 517
      CyPoR_like; NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via ...
      COG0369
      Location:126 → 517
      CysJ; Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

    2. XM_015765886.2 → XP_015621372.1  NADPH-dependent diflavin oxidoreductase 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V7W4, B8A920, Q0JJK2, Q5JL61
      Conserved Domains (2) summary
      cd06207
      Location:233 → 625
      CyPoR_like; NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via ...
      pfam00258
      Location:13 → 151
      Flavodoxin_1

    3. XM_066303651.1 → XP_066159748.1  NADPH-dependent diflavin oxidoreductase 1 isoform X3

    4. XM_015765888.3 → XP_015621374.1  NADPH-dependent diflavin oxidoreductase 1 isoform X2

      Conserved Domains (2) summary
      cd06207
      Location:125 → 517
      CyPoR_like; NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via ...
      COG0369
      Location:126 → 517
      CysJ; Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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