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    LOC4334930 ranBP2-type zinc finger protein At1g67325 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334930, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334930
    Gene description
    ranBP2-type zinc finger protein At1g67325
    Locus tag
    OSNPB_040110600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334930 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (621438..626742, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (617504..622870, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable carbohydrate esterase At4g34215 Neighboring gene pentatricopeptide repeat-containing protein At3g29230 Neighboring gene putative disease resistance protein RGA1 Neighboring gene ATP sulfurylase 2-like Neighboring gene uncharacterized LOC112938756

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP2-type zinc finger protein At1g67325
    Names
    Os04g0110600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      621438..626742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309309.1 → XP_066165406.1  ranBP2-type zinc finger protein At1g67325 isoform X2

      UniProtKB/TrEMBL
      B7EAL1, Q7XXF2

    2. XM_015779973.3 → XP_015635459.1  ranBP2-type zinc finger protein At1g67325 isoform X1

      UniProtKB/TrEMBL
      B8AUA0, B9FD24, Q25AE2
      Conserved Domains (3) summary
      smart00547
      Location:65 → 89
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:24 → 43
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:20 → 49
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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