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    LOC4325750 protein IRON-RELATED TRANSCRIPTION FACTOR 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325750, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325750
    Gene description
    protein IRON-RELATED TRANSCRIPTION FACTOR 2
    Locus tag
    OSNPB_010952800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsIRO2
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    Genomic context

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    See LOC4325750 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42624245..42629994, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41972004..41978403, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325748 Neighboring gene protein LONG AFTER FAR-RED 3 Neighboring gene uncharacterized LOC4325751 Neighboring gene uncharacterized LOC4325753 Neighboring gene disease resistance RPP13-like protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants. Ogo Y, et al. J Exp Bot, 2006. PMID 16887895
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IRON-RELATED TRANSCRIPTION FACTOR 2; protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
    Names
    Os01g0952800
    P0431G06.13-1
    bHLH transcription factor
    bHLH transcription factor-like
    transcription factor bHLH100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42624245..42629994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306802.1 → XP_066162899.1  protein IRON-RELATED TRANSCRIPTION FACTOR 2-like isoform X2

      UniProtKB/Swiss-Prot
      A9JX09, Q0JFZ0, Q941Z7

    2. XM_015757223.3 → XP_015612709.1  protein IRON-RELATED TRANSCRIPTION FACTOR 2 isoform X1

      UniProtKB/Swiss-Prot
      A2WZ60
      Conserved Domains (1) summary
      cl00081
      Location:69 → 145
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    RNA

    1. XR_001540192.3 RNA Sequence

    2. XR_001540190.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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