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    LOC4332534 uncharacterized LOC4332534 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332534, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332534
    Gene description
    uncharacterized LOC4332534
    Locus tag
    OSNPB_030295700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 19.7), roots before flowering (RPKM 19.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10395824..10406308)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10344929..10355468)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B Neighboring gene uncharacterized LOC4332533 Neighboring gene gamma-interferon-responsive lysosomal thiol protein Neighboring gene uncharacterized LOC107277100

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332534
    Names
    Os03g0295700
    rab3 GTPase-activating protein catalytic subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10395824..10406308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775586.3 → XP_015631072.1  uncharacterized protein LOC4332534 isoform X1

      UniProtKB/TrEMBL
      B9F7U3, Q0DSP8, Q10MT9
      Conserved Domains (1) summary
      pfam13890
      Location:525 → 679
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit

    2. XM_015775587.3 → XP_015631073.1  uncharacterized protein LOC4332534 isoform X2

      UniProtKB/TrEMBL
      B9F7U3
      Conserved Domains (1) summary
      pfam13890
      Location:524 → 678
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit

    3. XM_015775589.2 → XP_015631075.1  uncharacterized protein LOC4332534 isoform X3

      UniProtKB/TrEMBL
      B9F7U3
      Conserved Domains (1) summary
      pfam13890
      Location:411 → 565
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit
    Nucleotide Protein
    Heading Accession and Version

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