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    LOC4332972 transcription factor BHLH062-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332972, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332972
    Gene description
    transcription factor BHLH062-like
    Locus tag
    OSNPB_030379300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IRO3; OsIRO2; BHLH063; OsJ_11051; OsbHLH063
    Expression
    Broad expression in leaves before flowering (RPKM 82.2), mature seeds (RPKM 55.8) and 5 other tissues See more
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    Genomic context

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    See LOC4332972 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15000012..15002143)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275488 Neighboring gene probable methyltransferase PMT2 Neighboring gene uncharacterized LOC4332973 Neighboring gene 40S ribosomal protein S9-2-like Neighboring gene small nucleolar RNA Z161/Z228

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IRON-RELATED TRANSCRIPTION FACTOR 3; transcription factor BHLH062-like
    Names
    Basic helix-loop-helix protein 63
    LOC_Os03g26210
    OSJNBa0013O08.3
    Os03g0379300
    Protein IRON-RELATED TRANSCRIPTION FACTOR 3
    Transcription factor BHLH063
    bHLH transcription factor bHLH063
    transcription factor bHLH47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417799.1 → NP_001404728.1  protein IRON-RELATED TRANSCRIPTION FACTOR 3

      Status: VALIDATED

      Source sequence(s)
      AK061515, CI534416, CI698464
      UniProtKB/Swiss-Prot
      Q10KL8, Q8W397
      UniProtKB/TrEMBL
      B8AQJ0

    2. NM_001417800.1 → NP_001404729.1  protein IRON-RELATED TRANSCRIPTION FACTOR 3

      Status: VALIDATED

      Source sequence(s)
      AK061515, CI534416, CI769335
      UniProtKB/Swiss-Prot
      Q10KL8, Q8W397
      UniProtKB/TrEMBL
      B8AQJ0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      15000012..15002143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777815.2 → XP_015633301.1  transcription factor BHLH062-like

      UniProtKB/TrEMBL
      Q10KL8
      Conserved Domains (2) summary
      PRK03427
      Location:149 → 230
      PRK03427; cell division protein ZipA; Provisional
      cl00081
      Location:41 → 114
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    2. XM_015777816.2 → XP_015633302.1  transcription factor BHLH062-like

      UniProtKB/TrEMBL
      Q10KL8
      Conserved Domains (2) summary
      PRK03427
      Location:149 → 230
      PRK03427; cell division protein ZipA; Provisional
      cl00081
      Location:41 → 114
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10KL8.1 GenPept UniProtKB/Swiss-Prot:Q10KL8

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