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    LOC4338111 protein trichome birefringence-like 26 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338111, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338111
    Gene description
    protein trichome birefringence-like 26
    Locus tag
    OSNPB_050214900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 11.4), flowers (RPKM 10.8) and 6 other tissues See more
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    Genomic context

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    See LOC4338111 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (7123835..7127891)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET3a Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene BURP domain-containing protein 2-like Neighboring gene BURP domain-containing protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 26
    Names
    Os05g0214900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7123835..7127891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025832.1 → XP_025881617.1  protein trichome birefringence-like 26

      UniProtKB/TrEMBL
      A0A4Y5WWY6
      Conserved Domains (2) summary
      pfam13839
      Location:125 → 418
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:72 → 124
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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