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    LOC9272054 probable LRR receptor-like serine/threonine-protein kinase At1g06840 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272054, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC9272054
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g06840
    Locus tag
    OSNPB_050481100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 253.9), leaves after flowering (RPKM 248.9) and 5 other tissues See more
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    Genomic context

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    See LOC9272054 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23653391..23662374)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267560 Neighboring gene serotonin N-acetyltransferase 1, chloroplastic-like Neighboring gene B3 domain-containing protein Os05g0481400-like Neighboring gene uncharacterized LOC107281111 Neighboring gene KH domain-containing protein SPIN1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g06840
    Names
    Os05g0481100

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420623.1 → NP_001407552.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 precursor

      Status: VALIDATED

      Source sequence(s)
      AK120184, CB646158, CB646215, CI323089
      UniProtKB/TrEMBL
      A0A0P0WNS8, Q5KQI5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23653391..23662374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783999.2 → XP_015639485.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WNS8
      Conserved Domains (3) summary
      PLN00113
      Location:32 → 889
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:621 → 887
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:78 → 101
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015784001.2 → XP_015639487.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WNS8, Q5KQI5
      Conserved Domains (3) summary
      PLN00113
      Location:32 → 889
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:621 → 887
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:78 → 101
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_015784002.2 → XP_015639488.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WNS8, Q5KQI5
      Conserved Domains (3) summary
      PLN00113
      Location:32 → 889
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:621 → 887
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:78 → 101
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_015784003.2 → XP_015639489.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X4

      UniProtKB/TrEMBL
      Q5KQI5
      Conserved Domains (4) summary
      PLN00113
      Location:45 → 853
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:585 → 851
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:42 → 65
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:1 → 32
      LRRNT_2; Leucine rich repeat N-terminal domain

    5. XM_015784000.1 → XP_015639486.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WNS8, Q5KQI5
      Conserved Domains (3) summary
      PLN00113
      Location:32 → 889
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:621 → 887
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:78 → 101
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_026025318.1 → XP_025881103.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1

      UniProtKB/TrEMBL
      Q5KQI5
      Conserved Domains (3) summary
      cd14066
      Location:637 → 903
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:94 → 117
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:48 → 905
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

    7. XM_026025319.1 → XP_025881104.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X2

      UniProtKB/TrEMBL
      Q5KQI5
      Conserved Domains (3) summary
      cd14066
      Location:630 → 896
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:87 → 110
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:41 → 898
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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