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    LOC4330370 uncharacterized LOC4330370 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330370, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330370
    Gene description
    uncharacterized LOC4330370
    Locus tag
    OSNPB_020689700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1743_B12.26
    Expression
    Broad expression in leaves before flowering (RPKM 9.4), leaves after flowering (RPKM 5.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28777545..28780410, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28288913..28292083, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable purine permease 11 Neighboring gene uncharacterized LOC4330369 Neighboring gene protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 Neighboring gene protein NRT1/ PTR FAMILY 7.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330370
    Names
    50S ribosomal protein L18
    Os02g0689700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28777545..28780410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022818.2 → XP_025878603.1  uncharacterized protein LOC4330370

      UniProtKB/TrEMBL
      A2X8G7, A3AA99, Q6ZGY5
      Conserved Domains (1) summary
      cd00432
      Location:75 → 178
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...

    RNA

    1. XR_003240503.2 RNA Sequence

    2. XR_003240501.2 RNA Sequence

    3. XR_010739619.1 RNA Sequence

    4. XR_003240502.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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