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    LOC4328225 alpha-1,3-arabinosyltransferase XAT2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328225, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328225
    Gene description
    alpha-1,3-arabinosyltransferase XAT2-like
    Locus tag
    OSNPB_020135500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328225 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1880296..1882423)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1872606..1874870)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 13-like Neighboring gene wee1-like protein kinase Neighboring gene uncharacterized LOC4328226 Neighboring gene rDNA transcriptional regulator pol5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-1,3-arabinosyltransferase XAT2-like
    Names
    OSJNBa0081C13.2-1
    OSJNBa0081C13.2-2
    Os02g0135500
    P0585B01.29-1
    P0585B01.29-2
    protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
    putative HGA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1880296..1882423
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771307.3 → XP_015626793.1  alpha-1,3-arabinosyltransferase XAT2-like

      UniProtKB/TrEMBL
      A2X0M3, A3A2W7, Q6Z0Z4, Q6Z827
      Conserved Domains (1) summary
      pfam04577
      Location:206 → 394
      DUF563; Protein of unknown function (DUF563)
    Nucleotide Protein
    Heading Accession and Version

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