U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4339173 SNF1-related protein kinase regulatory subunit beta-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339173, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339173
    Gene description
    SNF1-related protein kinase regulatory subunit beta-1
    Locus tag
    OSNPB_050491200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSKbeta2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339173 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24252551..24255686, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24137678..24140997, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML9 Neighboring gene calmodulin-2-like Neighboring gene leucine-rich repeat protein 1 Neighboring gene myb family transcription factor PHL7

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SNF1-related protein kinase regulatory subunit beta-1
    Names
    Os05g0491200
    beta subunit 2 of SnRK1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24252551..24255686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783665.3 → XP_015639151.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X2

      UniProtKB/TrEMBL
      Q18PR8
      Conserved Domains (2) summary
      pfam04739
      Location:176 → 243
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:62 → 142
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    2. XM_015783664.3 → XP_015639150.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WNW9, Q18PR8, Q6F337
      Conserved Domains (2) summary
      pfam04739
      Location:209 → 276
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:95 → 175
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials