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    LOC4337367 pentatricopeptide repeat-containing protein At3g50420 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337367, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337367
    Gene description
    pentatricopeptide repeat-containing protein At3g50420
    Locus tag
    OSNPB_040672600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337367 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34849638..34856590, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34329743..34334469, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337365 Neighboring gene uncharacterized LOC4337366 Neighboring gene phytosulfokine receptor 1-like Neighboring gene peroxisome biogenesis protein 22 Neighboring gene uncharacterized protein At2g24330

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g50420
    Names
    Os04g0672600
    Os04g0672700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34849638..34856590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781626.3 → XP_015637112.2  pentatricopeptide repeat-containing protein At3g50420

      UniProtKB/TrEMBL
      A3AYI9, Q0J946, Q7FAQ9

    2. XM_015781627.3 → XP_015637113.2  pentatricopeptide repeat-containing protein At3g50420

      UniProtKB/TrEMBL
      A3AYI9, Q0J946, Q7FAQ9

    3. XM_015781625.3 → XP_015637111.2  pentatricopeptide repeat-containing protein At3g50420

      UniProtKB/TrEMBL
      A3AYI9, Q0J946, Q7FAQ9
    Nucleotide Protein
    Heading Accession and Version

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