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    LOC4345256 uncharacterized LOC4345256 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345256, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4345256
    Gene description
    uncharacterized LOC4345256
    Locus tag
    OSNPB_080320300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 9.0), leaves before flowering (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    See LOC4345256 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13943836..13950697)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene oligopeptide transporter 1 Neighboring gene indole-3-glycerol phosphate synthase, chloroplastic Neighboring gene homeobox protein B-H1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345256
    Names
    Os08g0320300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13943836..13950697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792859.2 → XP_015648345.1  uncharacterized protein LOC4345256 isoform X1

      UniProtKB/TrEMBL
      B8B9Q1
      Conserved Domains (1) summary
      TIGR02168
      Location:6 → 266
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015792861.2 → XP_015648347.1  uncharacterized protein LOC4345256 isoform X3

      UniProtKB/TrEMBL
      B8B9Q1
      Conserved Domains (1) summary
      TIGR02168
      Location:4 → 246
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_015792860.2 → XP_015648346.1  uncharacterized protein LOC4345256 isoform X2

      UniProtKB/TrEMBL
      B8B9Q1
      Conserved Domains (1) summary
      COG1196
      Location:2 → 257
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_001547920.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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