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    LOC4349154 2-oxoglutarate-Fe(II) type oxidoreductase hxnY [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349154, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4349154
    Gene description
    2-oxoglutarate-Fe(II) type oxidoreductase hxnY
    Locus tag
    OSNPB_100522900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 29.4), roots after flowering (RPKM 23.1) and 6 other tissues See more
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    Genomic context

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    See LOC4349154 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20281423..20285009)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936612 Neighboring gene U-box domain-containing protein 15 Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like Neighboring gene probable serine/threonine-protein kinase At1g54610

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    2-oxoglutarate-Fe(II) type oxidoreductase hxnY
    Names
    Os10g0522900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20281423..20285009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759114.2 → XP_015614600.1  2-oxoglutarate-Fe(II) type oxidoreductase hxnY isoform X2

      UniProtKB/TrEMBL
      Q109D5
      Conserved Domains (2) summary
      pfam03171
      Location:164 → 247
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:27 → 121
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal

    2. XM_015759113.2 → XP_015614599.1  2-oxoglutarate-Fe(II) type oxidoreductase hxnY isoform X1

      UniProtKB/TrEMBL
      Q0IWA1, Q109D6, Q7G7W6, Q9AUY4
      Conserved Domains (1) summary
      PLN03002
      Location:28 → 302
      PLN03002; oxidoreductase, 2OG-Fe(II) oxygenase family protein

    RNA

    1. XR_001540771.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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