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    LOC4349145 uncharacterized LOC4349145 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349145, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4349145
    Gene description
    uncharacterized LOC4349145
    Locus tag
    OSNPB_100521500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 16.3), flowers (RPKM 13.4) and 6 other tissues See more
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    Genomic context

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    See LOC4349145 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20181618..20185421)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protein OXA1-like Neighboring gene uncharacterized LOC4349144 Neighboring gene probable E3 ubiquitin-protein ligase XBOS33 Neighboring gene shaggy-related protein kinase alpha Neighboring gene RHOMBOID-like protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4349145; uncharacterized protein LOC4349145
    Names
    Os10g0521500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428220.1 → NP_001415149.1  uncharacterized LOC4349145

      Status: VALIDATED

      Source sequence(s)
      AK105796
      UniProtKB/TrEMBL
      A0A0P0XWV5, B9G6N4, Q9FWB5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20181618..20185421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758958.2 → XP_015614444.1  uncharacterized protein LOC4349145

      Conserved Domains (1) summary
      COG0596
      Location:51 → 334
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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