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    LOC4333107 hexosyltransferase GAUT11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333107, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333107
    Gene description
    hexosyltransferase GAUT11
    Locus tag
    OSNPB_030413400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 17.1), roots after flowering (RPKM 16.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17564658..17569259, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17109192..17113807, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit B-8-like Neighboring gene ACT domain-containing protein ACR4 Neighboring gene uncharacterized LOC4333108 Neighboring gene uncharacterized LOC107275536

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hexosyltransferase GAUT11
    Names
    Os03g0413400
    probable galacturonosyltransferase 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      17564658..17569259 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777310.2 → XP_015632796.1  hexosyltransferase GAUT11

      UniProtKB/TrEMBL
      A0A0P0VYS1, B8AJR4, B9F902, Q75IZ5
      Conserved Domains (1) summary
      PLN02742
      Location:8 → 541
      PLN02742; Probable galacturonosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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