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    LOC4335710 cytochrome b-c1 complex subunit Rieske, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335710, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335710
    Gene description
    cytochrome b-c1 complex subunit Rieske, mitochondrial
    Locus tag
    OSNPB_040398500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 103.2), flower buds (RPKM 96.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20053405..20056131)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19685262..19688060)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF113 Neighboring gene glycine--tRNA ligase, mitochondrial 1 Neighboring gene probable glucuronosyltransferase Os04g0398600 Neighboring gene pollen-specific protein C13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquinol-cytochrome-c reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, ubiquinol to cytochrome c IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial respiratory chain complex III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome b-c1 complex subunit Rieske, mitochondrial
    Names
    Os04g0398500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      20053405..20056131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781275.3 → XP_015636761.1  cytochrome b-c1 complex subunit Rieske, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WA69, A2XSZ0, Q01L36, Q7XLG4
      Conserved Domains (2) summary
      cd03470
      Location:155 → 278
      Rieske_cytochrome_bc1; Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including ...
      pfam02921
      Location:103 → 149
      UCR_TM; Ubiquinol cytochrome reductase transmembrane region
    Nucleotide Protein
    Heading Accession and Version

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