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    LOC107278299 uncharacterized LOC107278299 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278299, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC107278299
    Gene description
    uncharacterized LOC107278299
    Locus tag
    OSNPB_040495700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 29.3), leaves before flowering (RPKM 28.2) and 6 other tissues See more
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    Genomic context

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    See LOC107278299 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25272759..25276631, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24775649..24779608, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g07570 Neighboring gene transcription factor RF2a-like Neighboring gene uncharacterized LOC107280650 Neighboring gene protein NLP2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC107278299
    Names
    Os04g0495700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25272759..25276631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778449.3 → XP_015633935.1  uncharacterized protein LOC107278299

      UniProtKB/TrEMBL
      A2XV34, A3AV80, Q01IQ4, Q7XQI4
      Conserved Domains (2) summary
      cd00167
      Location:54 → 99
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam12579
      Location:188 → 221
      DUF3755; Protein of unknown function (DUF3755)
    Nucleotide Protein
    Heading Accession and Version

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