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    LOC4350453 dehydrin Rab16B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350453, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350453
    Gene description
    dehydrin Rab16B-like
    Locus tag
    OSNPB_110454200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RAB16B; OsJ_032471
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    Genomic context

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    See LOC4350453 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (17192363..17193492, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (15336080..15337175, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936912 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene water stress-inducible protein Rab21-like Neighboring gene protein MICRORCHIDIA 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Screening and cloning of antimicrobial DNA sequences using a vital staining method. Cheng X, et al. Gene, 2009 Feb 1. PMID 19027836
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cold acclimation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to abscisic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to water deprivation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dehydrin Rab16B
    Names
    LOC_Os11g26780
    putative dehydrin RAB

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423194.1 → NP_001410123.1  dehydrin Rab16B

      Status: VALIDATED

      Source sequence(s)
      CI062827, CI186692, CI277704, CI706383
      UniProtKB/Swiss-Prot
      B7E8Q0, Q2R4Z5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      17192363..17193492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R4Z5.1 GenPept UniProtKB/Swiss-Prot:Q2R4Z5

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