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    LOC4326487 probable acyl-activating enzyme 1, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326487, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4326487
    Gene description
    probable acyl-activating enzyme 1, peroxisomal
    Locus tag
    OSNPB_010342900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4326487 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13539742..13542030)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938873 Neighboring gene uncharacterized LOC9266164 Neighboring gene ABC transporter G family member 32-like Neighboring gene LYR motif-containing protein At3g19508 Neighboring gene uncharacterized LOC9269304 Neighboring gene importin subunit alpha-1b-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable acyl-activating enzyme 1, peroxisomal
    Names
    B1045F02.21
    Os01g0342900
    putative adenosine monophosphate binding protein 1 AMPBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13539742..13542030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779140.2 → XP_015634626.2  probable acyl-activating enzyme 1, peroxisomal

      UniProtKB/TrEMBL
      B8A7I3
      Conserved Domains (1) summary
      cd12118
      Location:38 → 593
      ttLC_FACS_AEE21_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis
    Nucleotide Protein
    Heading Accession and Version

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