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    LOC4328996 RNA-binding protein Raly [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328996, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4328996
    Gene description
    RNA-binding protein Raly
    Locus tag
    OSNPB_020274000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Rf2
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    Genomic context

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    See LOC4328996 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10022819..10027072)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9993968..9998220)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene proteinaceous RNase P 1, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4328995 Neighboring gene peroxisomal fatty acid beta-oxidation multifunctional protein-like Neighboring gene receptor-like protein EIX2 Neighboring gene protein tesmin/TSO1-like CXC 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thylakoid membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FERTILITY RESTORER RF2, mitochondrial
    Names
    LOC_Os02g17380
    Protein FERTILITY RESTORER RF2, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416503.1 → NP_001403432.1  protein FERTILITY RESTORER RF2, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CF311376, CF311377, CI206962, CI743777
      UniProtKB/Swiss-Prot
      F1SZ41, F1SZ42, F1SZ44, Q0E239

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10022819..10027072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F1SZ42.1 GenPept UniProtKB/Swiss-Prot:F1SZ42
    F1SZ44.1 GenPept UniProtKB/Swiss-Prot:F1SZ44

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