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    LOC4330599 serine protease SPPA, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330599, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330599
    Gene description
    serine protease SPPA, chloroplastic
    Locus tag
    OSNPB_020728100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330599 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30787338..30800299, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30297236..30306164, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase CIP8 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene basic leucine zipper 8 Neighboring gene uncharacterized LOC107280026 Neighboring gene ASC1-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine protease SPPA, chloroplastic
    Names
    B1121A12.37
    Os02g0728100
    putative protease IV

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30787338..30800299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771433.3 → XP_015626919.1  serine protease SPPA, chloroplastic

      UniProtKB/TrEMBL
      A3AAZ1, Q0DXX6, Q6Z329
      Conserved Domains (1) summary
      TIGR00705
      Location:119 → 614
      SppA_67K; signal peptide peptidase SppA, 67K type

    RNA

    1. XR_010739453.1 RNA Sequence

    2. XR_010739458.1 RNA Sequence

    3. XR_010739456.1 RNA Sequence

    4. XR_010739457.1 RNA Sequence

    5. XR_010739455.1 RNA Sequence

    6. XR_010739454.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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