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    LOC4343110 probable E3 ubiquitin-protein ligase XBOS34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343110, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343110
    Gene description
    probable E3 ubiquitin-protein ligase XBOS34
    Locus tag
    OSNPB_070446100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XBOS34
    Expression
    Broad expression in roots before flowering (RPKM 150.2), flowers (RPKM 43.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (15394355..15400221, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15237196..15243029, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357417 Neighboring gene CRIB domain-containing protein RIC7 Neighboring gene uncharacterized LOC112939557 Neighboring gene uncharacterized LOC136357500 Neighboring gene uncharacterized LOC136357501

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase XBOS34
    Names
    Ankyrin repeat domain and RING finger-containing protein XBOS34
    LOC_Os07g26490
    P0030H06.109-1
    P0030H06.109-2
    RING-type E3 ubiquitin transferase XBOS34
    XB3 protein homolog 4
    ankyrin repeat domain-containing protein
    auxin-regulated protein-like protein
    NP_001409053.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422124.1 → NP_001409053.1  probable E3 ubiquitin-protein ligase XBOS34

      Status: VALIDATED

      Source sequence(s)
      CB666034, CB666035, CI133091, CI227742, CI660181, CI667094
      UniProtKB/Swiss-Prot
      A0A0P0X5W8, Q7XI07, Q7XI08
      UniProtKB/TrEMBL
      A3BJA9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      15394355..15400221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XI08.1 GenPept UniProtKB/Swiss-Prot:Q7XI08

    Gene LinkOut

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