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    LOC4331255 homoserine kinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331255, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4331255
    Gene description
    homoserine kinase
    Locus tag
    OSNPB_020831800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1149_C12.16
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 26.5), flower buds (RPKM 21.5) and 6 other tissues See more
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    Genomic context

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    See LOC4331255 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35772170..35774782)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene sucrose synthase 6-like Neighboring gene protein argonaute 1C-like Neighboring gene probable phospholipase A2 homolog 1 Neighboring gene calcium-dependent protein kinase 6-like Neighboring gene monosaccharide-sensing protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Downy mildew resistance in Arabidopsis by mutation of HOMOSERINE KINASE. van Damme M, et al. Plant Cell, 2009 Jul. PMID 19622802, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables homoserine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in threonine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homoserine kinase
    Names
    Os02g0831800
    putative homoserine kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423880.1 → NP_001410809.1  homoserine kinase

      Status: VALIDATED

      Source sequence(s)
      AK060519, CI152950, CI299391
      UniProtKB/TrEMBL
      A0A0P0VRQ4, A2XBC6, Q6K969

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35772170..35774782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769132.2 → XP_015624618.1  homoserine kinase

      UniProtKB/TrEMBL
      Q6K969
      Conserved Domains (1) summary
      PLN02451
      Location:16 → 377
      PLN02451; homoserine kinase
    Nucleotide Protein
    Heading Accession and Version

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