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    LOC9272150 sterol 3-beta-glucosyltransferase UGT80B1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272150, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272150
    Gene description
    sterol 3-beta-glucosyltransferase UGT80B1
    Locus tag
    OSNPB_020210800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 6.8), flower buds (RPKM 5.6) and 6 other tissues See more
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    Genomic context

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    See LOC9272150 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (6211650..6216576)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6188705..6193632)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280061 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC112937944 Neighboring gene uncharacterized LOC112937981 Neighboring gene ABC transporter A family member 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    sterol 3-beta-glucosyltransferase UGT80B1; uncharacterized protein LOC9272150
    Names
    Os02g0210800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      6211650..6216576
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771957.3 → XP_015627443.1  sterol 3-beta-glucosyltransferase UGT80B1 isoform X1

      UniProtKB/TrEMBL
      B8AE54
      Conserved Domains (1) summary
      cl10013
      Location:10 → 515
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

    2. XM_015771958.3 → XP_015627444.1  uncharacterized protein LOC9272150 isoform X2

      UniProtKB/TrEMBL
      B8AE54
      Conserved Domains (1) summary
      cl10013
      Location:10 → 504
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

    3. XM_015771959.3 → XP_015627445.1  sterol 3-beta-glucosyltransferase UGT80B1 isoform X3

      Conserved Domains (1) summary
      cl10013
      Location:52 → 440
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

    4. XM_066307846.1 → XP_066163943.1  uncharacterized protein LOC9272150 isoform X4

    RNA

    1. XR_010739557.1 RNA Sequence

    2. XR_010739558.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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