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    LOC4325139 basic leucine zipper 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325139, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325139
    Gene description
    basic leucine zipper 6-like
    Locus tag
    OSNPB_010756200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BZIP06; OsbZIP06; OsJ_03500
    Expression
    Biased expression in flowers (RPKM 2.9), flower buds (RPKM 2.5) and 2 other tissues See more
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    Genomic context

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    See LOC4325139 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32328045..32330597)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31727753..31730381)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL39 Neighboring gene uncharacterized LOC107276174 Neighboring gene uncharacterized LOC4325140 Neighboring gene la-related protein 6A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic leucine zipper 6
    Names
    LOC_Os01g55150
    P0503C12.45
    bZIP protein 6
    putative transcription activator RF2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428194.1 → NP_001415123.1  basic leucine zipper 6

      Status: VALIDATED

      Source sequence(s)
      AK108553, CI237111, CI261561
      UniProtKB/Swiss-Prot
      A0A0P0V8A6, Q5JMK6
      UniProtKB/TrEMBL
      B8A9R7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32328045..32330597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021075.2 → XP_025876860.1  basic leucine zipper 6 isoform X1

      Conserved Domains (1) summary
      cd14703
      Location:140 → 191
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JMK6.1 GenPept UniProtKB/Swiss-Prot:Q5JMK6

    Gene LinkOut

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    Research Materials