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    LOC4343245 transcription factor MYB4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343245, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343245
    Gene description
    transcription factor MYB4-like
    Locus tag
    OSNPB_070484700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 23.7), leaves before flowering (RPKM 20.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17943330..17946311)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17777327..17780505)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene spindle and kinetochore-associated protein 1 homolog Neighboring gene uncharacterized LOC136357335 Neighboring gene adenine phosphoribosyltransferase 4 Neighboring gene probable trehalose-phosphate phosphatase 10 Neighboring gene beta-ureidopropionase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYB4-like
    Names
    Os07g0484700
    transcription factor MYB101

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17943330..17946311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792339.3 → XP_015647825.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    2. XM_015792342.3 → XP_015647828.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    3. XM_015792345.3 → XP_015647831.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    4. XM_066312521.1 → XP_066168618.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    5. XM_015792348.3 → XP_015647834.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    6. XM_066312522.1 → XP_066168619.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    7. XM_066312526.1 → XP_066168623.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    8. XM_015792347.3 → XP_015647833.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    9. XM_066312525.1 → XP_066168622.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    10. XM_015792351.3 → XP_015647837.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    11. XM_066312528.1 → XP_066168625.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    12. XM_066312529.1 → XP_066168626.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    13. XM_015792352.3 → XP_015647838.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    14. XM_066312523.1 → XP_066168620.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    15. XM_015792340.3 → XP_015647826.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    16. XM_066312517.1 → XP_066168614.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    17. XM_066312518.1 → XP_066168615.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    18. XM_066312530.1 → XP_066168627.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    19. XM_015792346.3 → XP_015647832.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    20. XM_066312527.1 → XP_066168624.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    21. XM_066312520.1 → XP_066168617.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    22. XM_066312531.1 → XP_066168628.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    23. XM_066312519.1 → XP_066168616.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    24. XM_066312532.1 → XP_066168629.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    25. XM_015792349.3 → XP_015647835.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    26. XM_066312533.1 → XP_066168630.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    27. XM_015792354.3 → XP_015647840.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    28. XM_015792355.3 → XP_015647841.1  transcription factor MYB4-like isoform X2

      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    29. XM_066312534.1 → XP_066168631.1  transcription factor MYB4-like isoform X2

    30. XM_015792358.3 → XP_015647844.1  transcription factor MYB4-like isoform X2

      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    31. XM_015792341.3 → XP_015647827.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    32. XM_015792344.3 → XP_015647830.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    33. XM_026026771.2 → XP_025882556.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7
      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional

    34. XM_066312524.1 → XP_066168621.1  transcription factor MYB4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0X638, Q0D6F7

    35. XM_015792357.3 → XP_015647843.1  transcription factor MYB4-like isoform X2

      Conserved Domains (1) summary
      PLN03091
      Location:88 → 164
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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