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    LOC4346566 vacuolar protein sorting-associated protein 32 homolog 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346566, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346566
    Gene description
    vacuolar protein sorting-associated protein 32 homolog 2
    Locus tag
    OSNPB_090267600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346566 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (9430826..9434586)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (5103028..5106854)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene protein NEDD1 Neighboring gene disease resistance protein RPM1 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle budding from membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 32 homolog 2
    Names
    Os09g0267600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      9430826..9434586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020104.2 → XP_025875889.1  vacuolar protein sorting-associated protein 32 homolog 2

      UniProtKB/TrEMBL
      A0A0P0XJ91, B7EB98, Q0J328
      Conserved Domains (1) summary
      cl21588
      Location:23 → 159
      Snf7

    2. XM_015795791.2 → XP_015651277.1  vacuolar protein sorting-associated protein 32 homolog 2

      UniProtKB/TrEMBL
      A0A0P0XJ91, B7EB98, Q0J328
      Conserved Domains (1) summary
      cl21588
      Location:23 → 159
      Snf7
    Nucleotide Protein
    Heading Accession and Version

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