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    LOC4343963 SKP1-like protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343963
    Gene description
    SKP1-like protein 11
    Locus tag
    OSNPB_070625500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1339_F05.112
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    Genomic context

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    See LOC4343963 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26134095..26134940)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25907643..25908549)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene SKP1-like protein 13 Neighboring gene SKP1-like protein 14 Neighboring gene SKP1-like protein 11 Neighboring gene SKP1-like protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SKP1-like protein 11
    Names
    Os07g0625500
    putative Skp1(S-phase kinase-associated protein1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26134095..26134940
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790857.3 → XP_015646343.1  SKP1-like protein 11

      UniProtKB/TrEMBL
      A2YNV7, A3BMD3, Q0D4H9, Q8LI46
      Conserved Domains (2) summary
      cd18322
      Location:24 → 141
      BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
      pfam01466
      Location:127 → 170
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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