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    LOC4332183 protein NRT1/ PTR FAMILY 8.3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332183, updated on 1-Aug-2024

    Summary

    Gene symbol
    LOC4332183
    Gene description
    protein NRT1/ PTR FAMILY 8.3
    Locus tag
    OSNPB_030235900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 16.0), flowers (RPKM 12.1) and 5 other tissues See more
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7211875..7218527, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7163387..7169012, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 8.3 Neighboring gene protein NRT1/ PTR FAMILY 8.3 Neighboring gene glutamate decarboxylase 1 Neighboring gene transcription factor MYB1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    protein NRT1/ PTR FAMILY 8.3; protein NRT1/ PTR FAMILY 8.4
    Names
    Os03g0235900

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7211875..7218527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308767.1XP_066164864.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1
    2. XM_015776739.3XP_015632225.1  protein NRT1/ PTR FAMILY 8.4 isoform X2

      UniProtKB/TrEMBL
      Q10PF8
      Conserved Domains (1) summary
      cl28910
      Location:45224
      MFS; Major Facilitator Superfamily
    3. XM_015776735.3XP_015632221.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1
      Conserved Domains (1) summary
      cl28910
      Location:45579
      MFS; Major Facilitator Superfamily
    4. XM_015776738.3XP_015632224.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1
      Conserved Domains (1) summary
      cl28910
      Location:45579
      MFS; Major Facilitator Superfamily
    5. XM_015776741.3XP_015632227.1  protein NRT1/ PTR FAMILY 8.4 isoform X2

      UniProtKB/TrEMBL
      Q10PF8
      Conserved Domains (1) summary
      cl28910
      Location:45224
      MFS; Major Facilitator Superfamily
    6. XM_015776736.3XP_015632222.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1
      Conserved Domains (1) summary
      cl28910
      Location:45579
      MFS; Major Facilitator Superfamily
    7. XM_066308766.1XP_066164863.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1
    8. XM_066308765.1XP_066164862.1  protein NRT1/ PTR FAMILY 8.3 isoform X1

      UniProtKB/TrEMBL
      Q0DTN5, Q10PF9, Q9SPU1