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    LOC4347514 meiosis-specific protein PAIR2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347514, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347514
    Gene description
    meiosis-specific protein PAIR2-like
    Locus tag
    OSNPB_090506800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ASY1; PAIR2; OsASY1
    Expression
    Broad expression in flower buds (RPKM 12.7), flowers (RPKM 12.1) and 6 other tissues See more
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    Genomic context

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    See LOC4347514 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24031562..24039632)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19620642..19628749)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347512 Neighboring gene uncharacterized LOC4347513 Neighboring gene TITAN-like protein Neighboring gene squamosa promoter-binding-like protein 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. PAIR2 is essential for homologous chromosome synapsis in rice meiosis I. Nonomura K, et al. J Cell Sci, 2006 Jan 15. PMID 16410547
    2. An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis. Nonomura KI, et al. Mol Genet Genomics, 2004 Mar. PMID 14758540
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    meiosis-specific protein PAIR2
    Names
    HORMA domain-containing protein 1
    LOC_Os09g32930
    Meiosis-specific protein PAIR2
    OSNPB_090506800
    Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2
    essential protein for meiotic synapsis

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403897.1 → NP_001390826.1  meiosis-specific protein PAIR2

      Status: VALIDATED

      Source sequence(s)
      AK064028, CI117332, EG714295
      UniProtKB/TrEMBL
      B8BDB5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24031562..24039632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303881.1 → XP_066159978.1  meiosis-specific protein PAIR2 isoform X1

      UniProtKB/TrEMBL
      B8BDB5

    2. XM_066303882.1 → XP_066159979.1  meiosis-specific protein PAIR2 isoform X3

      UniProtKB/TrEMBL
      B8BDB5

    3. XM_015756786.3 → XP_015612272.1  meiosis-specific protein PAIR2 isoform X2

      UniProtKB/Swiss-Prot
      Q0J0K5, Q76CY8
      UniProtKB/TrEMBL
      B8BDB5
      Conserved Domains (1) summary
      pfam02301
      Location:17 → 222
      HORMA; HORMA domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q76CY8.1 GenPept UniProtKB/Swiss-Prot:Q76CY8

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