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    LOC4335633 dynamin-related protein 3B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335633, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4335633
    Gene description
    dynamin-related protein 3B
    Locus tag
    OSNPB_040381000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.5), flowers (RPKM 9.3) and 6 other tissues See more
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    Genomic context

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    See LOC4335633 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19013895..19024358, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18659438..18669948, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280635 Neighboring gene uncharacterized LOC4335632 Neighboring gene probable sodium/metabolite cotransporter BASS1, chloroplastic Neighboring gene uncharacterized LOC4335635

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dynamin-related protein 3B
    Names
    Os04g0381000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      19013895..19024358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781667.3 → XP_015637153.1  dynamin-related protein 3B isoform X2

      UniProtKB/TrEMBL
      A0A0P0W9A2, B7EY00, Q0JDS3
      Conserved Domains (3) summary
      cd08771
      Location:43 → 305
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      pfam01031
      Location:232 → 516
      Dynamin_M; Dynamin central region
      pfam02212
      Location:636 → 724
      GED; Dynamin GTPase effector domain

    2. XM_015781666.3 → XP_015637152.1  dynamin-related protein 3B isoform X1

      UniProtKB/TrEMBL
      A0A0P0W9A2, Q7XS31
      Conserved Domains (3) summary
      cd08771
      Location:43 → 305
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      pfam01031
      Location:232 → 516
      Dynamin_M; Dynamin central region
      pfam02212
      Location:639 → 727
      GED; Dynamin GTPase effector domain

    3. XM_066309960.1 → XP_066166057.1  dynamin-related protein 3B isoform X3

    Nucleotide Protein
    Heading Accession and Version

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