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    LOC4330265 dehydrin DHN1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330265, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330265
    Gene description
    dehydrin DHN1-like
    Locus tag
    OSNPB_020669100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Dhn1; Dip1; LIP9; OsDhn1; OsLIP9; OJ1725_H08.23-1; OJ1725_H08.23-2
    Expression
    Biased expression in roots before flowering (RPKM 980.3), flowers (RPKM 202.5) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27651879..27653343, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27165465..27166917, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene uncharacterized LOC4330266 Neighboring gene ASI1-immunoprecipitated protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Screening and cloning of antimicrobial DNA sequences using a vital staining method. Cheng X, et al. Gene, 2009 Feb 1. PMID 19027836
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cold acclimation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to abscisic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to water deprivation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dehydrin DHN1
    Names
    Dehydrin 1
    LOC_Os02g44870
    Low tmperature-induced protein 9
    P0684A08.9-1
    P0684A08.9-2
    SK3-type dehydrin 1
    dehydration-stress inducible protein 1
    dehydrin COR410
    putative LIP9
    putative cold acclimation protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401918.1 → NP_001388847.1  dehydrin DHN1

      Status: VALIDATED

      Source sequence(s)
      AU184381, AU184382, CF311719, CI591103
      UniProtKB/Swiss-Prot
      B1NEV7, O48672, Q6ESR4
      UniProtKB/TrEMBL
      A2X854

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27651879..27653343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ESR4.1 GenPept UniProtKB/Swiss-Prot:Q6ESR4

    Gene LinkOut

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    Research Materials