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    LOC4344809 uncharacterized LOC4344809 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344809, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344809
    Gene description
    uncharacterized LOC4344809
    Locus tag
    OSNPB_080178300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1120_C08.24-1; OJ1120_C08.24-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 11.9), leaves after flowering (RPKM 10.6) and 6 other tissues See more
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    Genomic context

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    See LOC4344809 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4636237..4640933)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4586476..4591479)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene vacuolar sorting protein 18 Neighboring gene sugar transport protein MST5-like Neighboring gene uncharacterized LOC136351318 Neighboring gene uncharacterized LOC136351283

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RES complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344809
    Names
    BUD13 homolog
    Os08g0178300

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      4636237..4640933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792630.3 → XP_015648116.1  uncharacterized protein LOC4344809

      UniProtKB/TrEMBL
      B8BBC6, Q0J7M3, Q6ZKE8
      Conserved Domains (3) summary
      PHA03132
      Location:148 → 360
      PHA03132; thymidine kinase; Provisional
      PHA03247
      Location:116 → 248
      PHA03247; large tegument protein UL36; Provisional
      pfam09736
      Location:379 → 532
      Bud13; Pre-mRNA-splicing factor of RES complex

    2. XM_015792631.3 → XP_015648117.1  uncharacterized protein LOC4344809

      UniProtKB/TrEMBL
      B8BBC6, Q0J7M3, Q6ZKE8
      Conserved Domains (3) summary
      PHA03132
      Location:148 → 360
      PHA03132; thymidine kinase; Provisional
      PHA03247
      Location:116 → 248
      PHA03247; large tegument protein UL36; Provisional
      pfam09736
      Location:379 → 532
      Bud13; Pre-mRNA-splicing factor of RES complex
    Nucleotide Protein
    Heading Accession and Version

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