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    LOC4334191 probable protein phosphatase 2C 34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334191, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334191
    Gene description
    probable protein phosphatase 2C 34
    Locus tag
    OSNPB_030761100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BIPP2C2; OsPP2C34; OsBIPP2C2; OsJ_12676
    Expression
    Broad expression in roots before flowering (RPKM 205.8), leaves after flowering (RPKM 86.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334191 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32442632..32445403, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31472129..31474889, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene peamaclein Neighboring gene upstream activation factor subunit UAF30 Neighboring gene protein arginine N-methyltransferase 2 Neighboring gene pentatricopeptide repeat-containing protein At1g77360, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation of a novel protein phosphatase2C in rice and its response to gibberellin. Amir Hossain M, et al. Biochem Biophys Res Commun, 2018 Sep 10. PMID 30077370
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 34
    Names
    BTH-induced protein phosphatase 2C 2
    LOC_Os03g55320
    OSJNBb0048A17.8
    NP_001389201.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402272.1 → NP_001389201.1  probable protein phosphatase 2C 34

      Status: VALIDATED

      Source sequence(s)
      AK102620, AU076215, CB658198, CI761806
      UniProtKB/Swiss-Prot
      A2XM81, B9F5U1, Q10EH6, Q10EH8, Q5MFV4, Q5MFV5, Q94H98
      UniProtKB/TrEMBL
      B8AK89

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      32442632..32445403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94H98.1 GenPept UniProtKB/Swiss-Prot:Q94H98

    Gene LinkOut

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