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    LOC4348855 probable leucine-rich repeat receptor-like protein kinase At1g35710 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348855, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348855
    Gene description
    probable leucine-rich repeat receptor-like protein kinase At1g35710
    Locus tag
    OSNPB_100468500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348855 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17978466..17983081)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17312255..17316876)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene MDIS1-interacting receptor like kinase 2-like Neighboring gene uncharacterized LOC112936637 Neighboring gene L10-interacting MYB domain-containing protein Neighboring gene LRR receptor-like serine/threonine-protein kinase FLS2 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable leucine-rich repeat receptor-like protein kinase At1g35710
    Names
    Os10g0468500
    probable LRR receptor-like serine/threonine-protein kinase At4g08850

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17978466..17983081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758652.3 → XP_015614138.1  probable leucine-rich repeat receptor-like protein kinase At1g35710

      UniProtKB/TrEMBL
      Q0IX38, Q337M0, Q9AV65
      Conserved Domains (4) summary
      PLN03150
      Location:435 → 537
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:30 → 1186
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00031
      Location:408 → 431
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:432 → 455
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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