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    LOC4332759 pentatricopeptide repeat-containing protein At1g09900 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332759, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332759
    Gene description
    pentatricopeptide repeat-containing protein At1g09900
    Locus tag
    OSNPB_030336000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332759 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12500038..12502222)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12444908..12447171)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase IRK Neighboring gene valine--tRNA ligase, mitochondrial 1 Neighboring gene vicilin-like seed storage protein At2g28490 Neighboring gene transcription factor RF2b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g09900
    Names
    Os03g0336000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12500038..12502222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777329.3 → XP_015632815.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      A2XGF2, A3AHP7, Q0DS37, Q10LT2
      Conserved Domains (2) summary
      PLN03218
      Location:127 → 463
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:235 → 262
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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