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    LOC4331556 splicing factor U2af large subunit B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331556, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331556
    Gene description
    splicing factor U2af large subunit B-like
    Locus tag
    OSNPB_030138100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331556 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2111333..2120301, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2103208..2112179, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase inhibitor 5-like Neighboring gene protein NPGR2 Neighboring gene alkane hydroxylase MAH1 Neighboring gene uncharacterized LOC4331558 Neighboring gene protein unc-13 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables poly-pyrimidine tract binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor U2af large subunit B-like; uncharacterized protein LOC4331556
    Names
    Os03g0138100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2111333..2120301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774894.3 → XP_015630380.1  splicing factor U2af large subunit B-like isoform X1

      UniProtKB/TrEMBL
      Q10S20, Q10S21
      Conserved Domains (3) summary
      PTZ00121
      Location:37 → 146
      PTZ00121; MAEBL; Provisional
      TIGR01642
      Location:304 → 746
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cl17169
      Location:917 → 958
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015774893.3 → XP_015630379.1  splicing factor U2af large subunit B-like isoform X1

      UniProtKB/TrEMBL
      Q10S20, Q10S21
      Conserved Domains (3) summary
      PTZ00121
      Location:37 → 146
      PTZ00121; MAEBL; Provisional
      TIGR01642
      Location:304 → 746
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cl17169
      Location:917 → 958
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_015774895.2 → XP_015630381.1  uncharacterized protein LOC4331556 isoform X2

      UniProtKB/TrEMBL
      Q0DVB7
      Conserved Domains (1) summary
      cl17169
      Location:26 → 96
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_066308581.1 → XP_066164678.1  uncharacterized protein LOC4331556 isoform X2

      UniProtKB/TrEMBL
      Q0DVB7
    Nucleotide Protein
    Heading Accession and Version

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