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    LOC4341289 pollen allergen Phl p 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341289, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341289
    Gene description
    pollen allergen Phl p 11
    Locus tag
    OSNPB_060556600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341289 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22081169..22082328)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21222658..21223745)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene amino acid permease 3 Neighboring gene amino acid permease 3 Neighboring gene F-box protein At5g03100 Neighboring gene receptor-like protein kinase 5 Neighboring gene receptor-like protein 52 Neighboring gene receptor-like protein kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pollen allergen Phl p 11
    Names
    OSJNBa0090E14.1
    Os06g0556600
    P0458E11.31
    putative pollen allergen Phl p 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22081169..22082328
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787171.3 → XP_015642657.2  pollen allergen Phl p 11

      UniProtKB/TrEMBL
      A2YE17, A3BCQ2, Q5Z7I0
      Conserved Domains (1) summary
      pfam01190
      Location:70 → 148
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version

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