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    LOC4324011 probable aspartyl aminopeptidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324011, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324011
    Gene description
    probable aspartyl aminopeptidase
    Locus tag
    OSNPB_010967900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1656_A11.4-1
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 27.1), roots after flowering (RPKM 16.8) and 6 other tissues See more
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    Genomic context

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    See LOC4324011 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43342312..43347832)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42689865..42695448)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280163 Neighboring gene uncharacterized LOC4324010 Neighboring gene proteinaceous RNase P 2 Neighboring gene uncharacterized LOC4324013

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aminopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aspartyl aminopeptidase
    Names
    Os01g0967900
    putative aspartyl aminopeptidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43342312..43347832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765821.3 → XP_015621307.1  probable aspartyl aminopeptidase isoform X1

      UniProtKB/TrEMBL
      B8A9V6, B9EWY1, Q0JFQ1, Q8SA06
      Conserved Domains (1) summary
      cd05658
      Location:67 → 513
      M18_DAP; M18 peptidase aspartyl aminopeptidase

    2. XM_066306841.1 → XP_066162938.1  probable aspartyl aminopeptidase isoform X2

    Nucleotide Protein
    Heading Accession and Version

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