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    LOC4337525 peroxisomal membrane protein PEX14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337525, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337525
    Gene description
    peroxisomal membrane protein PEX14
    Locus tag
    OSNPB_050101200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 44.9), roots after flowering (RPKM 44.6) and 6 other tissues See more
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    Genomic context

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    See LOC4337525 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (99448..103379)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (91694..95752)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g28440 Neighboring gene uncharacterized LOC4337524 Neighboring gene uncharacterized LOC9268312 Neighboring gene large ribosomal subunit protein bL28c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix, docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of peroxisomal importomer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisomal membrane protein PEX14
    Names
    Os05g0101200
    peroxisomal membrane protein OsPex14p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      99448..103379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784020.3 → XP_015639506.1  peroxisomal membrane protein PEX14 isoform X1

      UniProtKB/TrEMBL
      A2XZD5, B9FK02, Q0DLI1, Q6X1C9, Q9FW35
      Conserved Domains (1) summary
      pfam04695
      Location:41 → 86
      Pex14_N; Peroxisomal membrane anchor protein (Pex14p) conserved region

    2. XM_015784021.3 → XP_015639507.1  peroxisomal membrane protein PEX14 isoform X2

      UniProtKB/TrEMBL
      A2XZD5, B9FK02
      Conserved Domains (1) summary
      pfam04695
      Location:39 → 84
      Pex14_N; Peroxisomal membrane anchor protein (Pex14p) conserved region
    Nucleotide Protein
    Heading Accession and Version

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