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    LOC4331550 CSC1-like protein At4g35870 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331550, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331550
    Gene description
    CSC1-like protein At4g35870
    Locus tag
    OSNPB_030137400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331550 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2073084..2075768)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2065031..2067727)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 28 Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene mitochondrial outer membrane protein porin 6-like Neighboring gene uncharacterized LOC4331552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CSC1-like protein At4g35870
    Names
    Os03g0137400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2073084..2075768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777249.3 → XP_015632735.1  CSC1-like protein At4g35870

      UniProtKB/TrEMBL
      A0A097NUR1, B8AMU4, Q0DVC3, Q10S28
      Conserved Domains (2) summary
      pfam02714
      Location:388 → 723
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam14703
      Location:185 → 377
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter
    Nucleotide Protein
    Heading Accession and Version

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