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    LOC4333329 formiminotransferase cyclodeaminase-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333329, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333329
    Gene description
    formiminotransferase cyclodeaminase-like protein
    Locus tag
    OSNPB_030582000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333329 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (22250990..22252815)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21392900..21394894)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355657 Neighboring gene uncharacterized LOC107280377 Neighboring gene uncharacterized LOC107280494 Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial Neighboring gene secretory carrier-associated membrane protein 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables folic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formiminotransferase cyclodeaminase-like protein
    Names
    Os03g0582000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      22250990..22252815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777771.3 → XP_015633257.1  formiminotransferase cyclodeaminase-like protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0VZN4, A2XIW3, Q0DQL6, Q75ID3
      Conserved Domains (1) summary
      pfam07837
      Location:24 → 214
      FTCD_N; Formiminotransferase domain, N-terminal subdomain

    2. XM_015777772.3 → XP_015633258.1  formiminotransferase cyclodeaminase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A0P0VZK1, A2XIW3, Q75ID2
      Conserved Domains (1) summary
      pfam07837
      Location:9 → 199
      FTCD_N; Formiminotransferase domain, N-terminal subdomain

    3. XM_066309009.1 → XP_066165106.1  formiminotransferase cyclodeaminase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A0P0VZK1, Q75ID2
    Nucleotide Protein
    Heading Accession and Version

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