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    LOC4330355 F-box protein SKIP31 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330355, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4330355
    Gene description
    F-box protein SKIP31
    Locus tag
    OSNPB_020686500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1717_A09.36
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    Genomic context

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    See LOC4330355 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28610966..28612382)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28122207..28123577)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g15970 Neighboring gene aspartate--tRNA ligase 2, cytoplasmic Neighboring gene MYG1 protein C694.04c Neighboring gene uncharacterized LOC4330358

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein SKIP31; uncharacterized protein LOC4330355
    Names
    F-box domain-containing protein
    Os02g0686500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28610966..28612382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767076.3 → XP_015622562.1  F-box protein SKIP31 isoform X2

      UniProtKB/TrEMBL
      A3AA79
      Conserved Domains (1) summary
      pfam12937
      Location:1 → 45
      F-box-like

    2. XM_015767074.3 → XP_015622560.1  uncharacterized protein LOC4330355 isoform X1

      UniProtKB/TrEMBL
      Q0DYK3, Q6ZHC1
    Nucleotide Protein
    Heading Accession and Version

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