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    LOC107276869 uncharacterized LOC107276869 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107276869, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC107276869
    Gene description
    uncharacterized LOC107276869
    Locus tag
    OSNPB_010720300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0690B02.5
    Expression
    Broad expression in flowers (RPKM 81.7), flower buds (RPKM 76.0) and 6 other tissues See more
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    Genomic context

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    See LOC107276869 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30617947..30620746, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30020969..30023807, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene aspartyl protease family protein 2 Neighboring gene uncharacterized LOC107276756 Neighboring gene inorganic pyrophosphatase 1 Neighboring gene chlorophyll a-b binding protein 2, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADH dehydrogenase (ubiquinone) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quinone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aerobic respiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in electron transport coupled proton transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial respiratory chain complex I assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC107276869
    Names
    NADH-quinone oxidoreductase subunit B
    Os01g0720300
    putative NADH2 dehydrogenase (ubiquinone) chain PSST

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30617947..30620746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792761.2 → XP_015648247.1  uncharacterized protein LOC107276869

      UniProtKB/TrEMBL
      A2WUJ3, B9EZ64, Q8W0E8
      Conserved Domains (1) summary
      PRK06411
      Location:48 → 196
      PRK06411; NADH-quinone oxidoreductase subunit NuoB
    Nucleotide Protein
    Heading Accession and Version

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