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    LOC4328803 protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328803, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328803
    Gene description
    protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog
    Locus tag
    OSNPB_020230100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 19.7), milk grains (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    See LOC4328803 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7341129..7344150)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7316381..7319413)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278559 Neighboring gene protein NONRESPONDING TO OXYLIPINS 2, mitochondrial Neighboring gene uncharacterized LOC4328804 Neighboring gene protodermal factor 1 Neighboring gene uncharacterized LOC112936081

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog
    Names
    OSJNBb0035N08.27
    Os02g0230100
    protein phosphatase 1 regulatory subunit pprA
    putative sds22+

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7341129..7344150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767509.3 → XP_015622995.1  protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog

      UniProtKB/TrEMBL
      B8AEJ5, B9F4F0, Q6H527
      Conserved Domains (3) summary
      PRK15370
      Location:25 → 177
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:94 → 115
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:142 → 328
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
    Heading Accession and Version

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