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    LOC4330259 mechanosensitive ion channel protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330259, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330259
    Gene description
    mechanosensitive ion channel protein 5
    Locus tag
    OSNPB_020668000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1725_H08.12-1; OJ1725_H08.12-2
    Expression
    Ubiquitous expression in flowers (RPKM 4.4), milk grains (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4330259 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27604437..27608885)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27118012..27122439)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330257 Neighboring gene uncharacterized LOC4330258 Neighboring gene uncharacterized LOC107280161 Neighboring gene heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mechanosensitive monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mechanosensitive ion channel protein 5
    Names
    Os02g0668000
    mechanosensitive ion channel domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27604437..27608885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771376.2 → XP_015626862.1  mechanosensitive ion channel protein 5

      UniProtKB/TrEMBL
      A3A9Y4, Q6ET90
      Conserved Domains (1) summary
      COG0668
      Location:709 → 966
      MscS; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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