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    LOC4332217 small GTPase LIP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332217, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332217
    Gene description
    small GTPase LIP1
    Locus tag
    OSNPB_030242200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 12.9), flower buds (RPKM 8.9) and 6 other tissues See more
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    Genomic context

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    See LOC4332217 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7563163..7566526)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7514097..7517553)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic Neighboring gene cell cycle checkpoint protein RAD17 Neighboring gene formin-like protein 5 Neighboring gene subtilisin-like protease SBT1.6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small GTPase LIP1
    Names
    Os03g0242200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7563163..7566526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777431.3 → XP_015632917.1  small GTPase LIP1

      UniProtKB/TrEMBL
      B9F6Q2, Q0DTK2, Q10P96
      Conserved Domains (1) summary
      PLN00023
      Location:1 → 338
      PLN00023; GTP-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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