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    LOC4326171 golgin-84-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326171, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4326171
    Gene description
    golgin-84-like
    Locus tag
    OSNPB_010744400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_03424
    Expression
    Ubiquitous expression in flowers (RPKM 12.5), flower buds (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4326171 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31120176..31132876, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326169 Neighboring gene casein kinase 1-like protein HD16 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC107277855

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, vesicle recycling within Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cisterna IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    golgin-84
    Names
    LOC_Os01g54119
    OSJNBa0014K08.9
    putative Golgi autoantigen, golgin subfamily A member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401629.1 → NP_001388558.1  golgin-84

      Status: VALIDATED

      Source sequence(s)
      AK067648, AP014957, CI001482
      UniProtKB/Swiss-Prot
      Q0JJD9, Q5JLY8
      UniProtKB/TrEMBL
      B8A9E3

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31120176..31132876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795708.2 → XP_015651194.1  golgin-84

      UniProtKB/Swiss-Prot
      Q5JLY8
      Conserved Domains (3) summary
      TIGR02168
      Location:247 → 565
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09787
      Location:435 → 682
      Golgin_A5; Golgin subfamily A member 5
      NF033845
      Location:90 → 267
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

    RNA

    1. XR_003239000.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JLY8.1 GenPept UniProtKB/Swiss-Prot:Q5JLY8

    Gene LinkOut

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    Research Materials