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    LOC4339583 branched-chain-amino-acid aminotransferase 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339583, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339583
    Gene description
    branched-chain-amino-acid aminotransferase 5, chloroplastic
    Locus tag
    OSNPB_050558400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339583 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27963375..27969355)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27778774..27784808)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276763 Neighboring gene berberine bridge enzyme-like 23 Neighboring gene uncharacterized LOC136356560 Neighboring gene berberine bridge enzyme-like 23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables branched-chain-amino-acid transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in branched-chain amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    branched-chain amino acid aminotransferase 2, chloroplastic; branched-chain-amino-acid aminotransferase 5, chloroplastic
    Names
    Os05g0558400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27963375..27969355
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783758.3 → XP_015639244.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    2. XM_015783757.3 → XP_015639243.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    3. XM_026025299.2 → XP_025881084.2  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2

    4. XM_015783760.3 → XP_015639246.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    5. XM_015783759.3 → XP_015639245.2  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    6. XM_015783762.3 → XP_015639248.2  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2

    7. XM_066310626.1 → XP_066166723.1  branched-chain amino acid aminotransferase 2, chloroplastic isoform X1

    Nucleotide Protein
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